Journal Covers

Below are recent journal covers featuring NCMIR images. View additional covers in the archive.

Microscopy and Analysis cover
 

Publications 2007

The multidisciplinary work of NCMIR researchers and their collaborators have been published in a variety of journals and presented in local, national, and international forums.

Articles

  1. Bencheikh-Latmani R, Obraztsova A, Mackey MR, Ellisman MH and Tebo BM (2007) Toxicity of Cr(lll) to Shewanella sp. strain MR-4 during Cr(VI) reduction. Environ Sci Technol 41(1):214-220.
  2. Bielas SL, Serneo FF, Chechlacz M, Deerinck TJ, Perkins GA, Allen PB, Ellisman MH and Gleeson JG (2007) Spinophilin Facilitates Dephosphorylation of Doublecortin by PP1 to Mediate Microtubule Bundling at the Axonal Wrist. Cell 129(3):579-591.
  3. Boassa D, Ambrosi C, Qiu F, Dahl G, Gaietta G and Sosinsky G (2007) Pannexin1 channels contain a glycosylation site that targets the hexamer to the plasma membrane. J Biol Chem 282(43):31733-31743.
  4. Bouwer JC, Mackey MR, Lawrence A, Deerinck TJ, Jones YZ, Terada M, Martone ME, Peltier ST and Ellisman MH (2007) The application of energy-filtered electron microscopy to tomography of thick, selectively stained biological samples. Methods Cell Biol 79:643-660.
  5. Bumbarger DJ, Crum J, Ellisman MH and Baldwin JG (2007) Three-dimensional fine structural reconstruction of the nose sensory structures of Acrobeles complexus compared to Caenorhabditis elegans (Nematoda: Rhabditida). J Morphol. 268(8):649-663.
  6. Chang SY, Zagha E, Kwon ES, Ozaita A, Bobik M, Martone ME, Ellisman MH, Heintz N and Rudy B (2007) Distribution of Kv3.3 potassium channel subunits in distinct neuronal populations of mouse brain. J Comp Neurol 502(6):953-972.
  7. Deerinck TJ, Giepmans BN, Smarr BL, Martone ME and Ellisman MH (2007) Light and electron microscopic localization of multiple proteins using quantum dots, in Methods in Molecular Biology 374:43-54.
  8. Fong LL, Larson SD, Gupta A, Condit C, Bug WJ, Chen L, West R, Lamont S, Terada M and Martone ME (2007) An Ontology-Driven Knowledge Environment for Subcellular Neuroanatomy, in OWL: Experiences and Directions, June 6-7, 2007 (Golbreich C, Kalyanpur A and Parsia B eds), CEUR Workshop Proceedings, Innsbruck, Austria
  9. Gold JR, Perkins GA, Erb HN and Ainsworth DM (2007) Cytokine profiles of peripheral blood mononuclear cells isolated from septic and healthy neonatal foals. J Vet Intern Med 21(3):482-488.
  10. Goodman LB, Loregian A, Perkins GA, Nugent J, Buckles EL, Mercorelli B, Kydd JH, Palu G, Smith KC, Osterrieder N and Davis-Poynter N (2007) A Point Mutation in a Herpesvirus Polymerase Determines Neuropathogenicity. PLoS Pathog 3(11):e160.
  11. Johnson JE, GA Perkins, A Giddabasappa, S Chaney, W Xiao, AD White, JM Brown, J Waggoner, MH Ellisman, and DA Fox. Spatiotemporal regulation of ATP and Ca2+ dynamics in vertebrate photoreceptor ribbon synapses. Molecular Vision 13:887-919.
  12. Ju WK, Liu Q, Kim KY, Crowston JG, Lindsey JD, Agarwal N, Ellisman MH, Perkins GA and Weinreb RN (2007) Elevated Hydrostatic Pressure Triggers Mitochondrial Fission and Decreases Cellular ATP in Differentiated RGC-5 Cells. Investigative Ophthalmology and Visual Science 48(5):2145-2151.
  13. Kopek BG, Perkins G, Miller DJ, Ellisman MH and Ahlquist P (2007) Three-Dimensional Analysis of a Viral RNA Replication Complex Reveals a Virus-Induced Mini-Organelle. PLoS Biol 5(9):e220.
  14. Larson SD, Fong LL, Gupta A, Condit C, Bug WJ and Martone ME (2007) A Formal Ontology for Subcellular Anatomy. Frontiers in Neuroinformatics 1(3).
  15. Lewis JP, Mostafavi I, Sosinsky G, Martone M, West R. (2007) Shape priors by kernel density modeling of PCA residual structure. IEEE International Conference on Image Processing, September 16 – 19, 2007, San Antonio, TX. (Peer-reviewed conference publication).
  16. Lin AW, ST Peltier, JS Grethe, and MH Ellisman (2007) Case studies on the use of workflow technologies for scientific analysis, In Scientific Workflows for eScience: Scientific Workflows for Grids (Taylor IJ, E Deelman, DB Gannon, and MS Shields (Eds.)), Springer Publishing, New York. 530p.
  17. Martin BR, Deerinck TJ, Ellisman MH, Taylor SS and Tsien RY (2007) Isoform-Specific PKA Dynamics Revealed by Dye-Triggered Aggregation and DAKAP1alpha-Mediated Localization in Living Cells. Chem Biol 14(9):1031-1042.
  18. Martone ME, Sargis J, Tran J, Wong WW, Jiles H and Mangir C (2007) Database resources for cellular electron microscopy. Methods Cell Biol 79:799-822.
  19. Martone ME, Zaslavsky I, Gupta A, Memon A, Tran J, Wong W, Fong L, Larson SD and Ellisman MH (2007) The smart atlas: spatial and semantic strategies for multiscale integration of brain data, in Anatomy Ontologies for Bioinformatics: Principles and Practice (Burger A, Davidson D and Baldock R eds.) Springer-Verlag, London.
  20. Niikura Y, Dixit A, Scott R, Perkins G and Kitagawa K (2007) BUB1 mediation of caspase-independent mitotic death determines cell fate. J Cell Biol 178(2):283-296.
  21. Oshima A, K Tani,Y Hiroaki, Y Fujiyoshi, and GE Sosinsky (2007) Three-dimensional structure of a human connexin26 gap junction channel reveals a plug in the vestibule. Proc. Natl. Acad. Sciences 104(24): 10034-10039.
  22. Perez GI, Acton BM, Jurisicova A, Perkins GA, White A, Brown J, Trbovich AM, Kim MR, Fissore R, Xu J, Ahmady A, D'Estaing SG, Li H, Kagawa W, Kurumizaka H, Yokoyama S, Okada H, Mak TW, Ellisman MH, Casper RF and Tilly JL (2007) Genetic variance modifies apoptosis susceptibility in mature oocytes via alterations in DNA repair capacity and mitochondrial ultrastructure.Cell Death Differ 14(3):524-533.
  23. Pezzoli K, Tukey R, Sarabia H, Zaslavsky I, Miranda ML, Suk WA, Lin A and Ellisman M (2007) The NIEHS Environmental Health Sciences Data Resource Portal: placing advanced technologies in service to vulnerable communities. Environ Health Perspect 115(4):564-571.
  24. Sosinsky GE, Giepmans BN, Deerinck TJ, Gaietta GM and Ellisman MH (2007) Markers for correlated light and electron microscopy. Methods Cell Biol 79:575-591.
  25. Sosinsky GE, Solan JL, Gaietta GM, Ngan L, Lee GJ, Mackey MR and Lampe PD (2007) The C-terminus of connexin43 adopts different conformations in the Golgi and gap junction as detected with structure-specific antibodies. Biochem J 408(3):375-385.
  26. Sun MG, Williams J, Munoz-Pinedo C, Perkins GA, Brown JM, Ellisman MH, Green DR and Frey TG (2007) Correlated three-dimensional light and electron microscopy reveals transformation of mitochondria during apoptosis. Nat Cell Biol 9(9):1057-1072.
  27. Toni N, Teng EM, Bushong EA, Aimone JB, Zhao C, Consiglio A, van Praag H, Martone ME, Ellisman MH and Gage FH (2007) Synapse formation on neurons born in the adult hippocampus. Nature Neuroscience May 7; [Epub ahead of print]
  28. Ultanir SK, Kim JE, Hall BJ, Deerinck T, Ellisman MH and Ghosh A (2007) Regulation of spine morphology an dspine density by NMDA receptor signaling in vivo. Proc Natl Acad Sci U S A 104(49):19553-19558.
  29. Ure J, Procter R, Martone M, Porteous D, Lloyd S, Lawrie S, Job D, Baldock R, Philp A, Liewald D, Rakebrandt F, Blaikie A, McKay C, Anderson S, Ainsworth J, van Hemert J, Blanquer I, Sinnott R, Barillot C, Gibaud FB, Williams A, Hartswood M, Watson P, Smith L, Burger A, Kennedy J, Gonzalez-Velez H, Stevens R, Corcho O, Morton R, Linksted P, Deschenes M, McGilchrist M, Johnson P, Voss A, Gertz R and Wardlaw J (2007) Data Integration in eHealth: A Domain/Disease Specific Roadmap. Stud Health Technol Inform 126:144-153.
  30. Xuong NH, Jin L, Kleinfelder S, Li S, Leblanc P, Duttweiler F, Bouwer JC, Peltier ST, Milazzo AC and Ellisman M (2007) Future directions for camera systems in electron microscopy. Methods Cell Biol 79:721-739.
  31. Yamaguchi R, Andreyev A, Murphy AN, Perkins GA, Ellisman MH and Newmeyer DD (2007) Mitochondria frozen with trehalose retain a number of biological functions and preserve outer membrane integrity. Cell Death Differ 14(3):616-624.
  32. Yu J, Bippes CA, Hand GM, Muller DJ and Sosinsky GE (2007) Aminosulfonate modulated pH induced conformational changes in connexin26 hemichannels. J Biol Chem 16:16.
  33. Yuan H, Gerencser AA, Liot G, Lipton SA, Ellisman M, Perkins GA and Bossy-Wetzel E (2007) Mitochondrial fission is an upstream and required event for bax foci formation in response to nitric oxide in cortical neurons. Cell Death Differ 14(3):462-471.
  34. Zemljic-Harpf AE, Miller JC, Henderson SA, Wright AT, Manso AM, Elsherif L, Dalton ND, Thor AK, Perkins GA, McCulloch AD and Ross RS (2007) Cardiac-Myocyte Specific Excision of the Vinculin Gene Disrupts Cellular Junctions Causing Sudden Death or Dilated Cardiomyopathy. Mol Cell Biol.;27(21):7522-37.

Oral and Poster Presentations

  1. Ambrosi C, Oshima A, Smock A, Brown J, Sosinsky G. (2007) Structural Analysis of Four Connexin26 Mutants Gap Junctions and Hemichannels. International Gap Junction Conference 2007, Denmark 4-9 August 2007.
  2. Ascoli GA, D Gardner, ME Martone, GM Shepherd, PW Sternberg (2007)  Neuroscience information framework: access to web neuroscience. Society for Neuroscience 2007 Conference, San Diego, CA. Nov. 3-7, 2007.
  3. Berlanga ML, DL Price, W Smith, VM Phung, A Thor, M Terada, N Yamada, M Cyr, A Laakso, J Obayashi, NAB MacLean, MH Ellisman, M Caron, ME Martone (2007)  Multiscale imaging characterization of DAT knockout mice reveals changes in medium spiny neuron-associated proteins and ultrastructure. Society for Neuroscience 2007 Conference, San Diego, CA. Nov. 3-7, 2007.
  4. Boassa D, C Ambrosi , G Dahl, G Gaietta and G Sosinsky (2007) Pannexin 1 channels contain a glycosylation site that targets the oligomer to the plasma membrane. International Gap Junction Conference 2007, August 4-9, Elsinore, Denmark.
  5. Boassa D, V Phung, WD Johnson-Courtright, D Price, and G Sosinsky (2007) Pannexin 1 and 2 expressed in mouse brain: trafficking and relative cellular localization. Society for Neuroscience 2007 Conference, San Diego, CA. Nov. 3-7, 2007.
  6. Boline JK, I Zaslavsky, WJ Bug, RW Williams, ME Martone, S Anderson, W Wong, H Yuan, A Memon, Q Ng, JS Grethe, DM Sforza, A MacKenzie-Graham, J Nissanov, C Gustafson, AW Toga. (2007)  Accessing a sharing infrastructure with the Mouse BIRN atlasing toolkit (MBAT). Society for Neuroscience 2007 Conference, San Diego, CA. Nov. 3-7, 2007.
  7. Burette A, J Crum, ME Martone, MH Ellisman, RJ Weinberg (2007) Morphological evidence for trans-synaptic signaling modules within glutamatergic synapses. Society for Neuroscience 2007 Conference, San Diego, CA. Nov. 3-7, 2007.
  8. Deerinck TD, and MH Ellisman (2007) The Application of Fluorescent Quantum Dots to Confocal, Multi-Photon, and Electron Microscopic Imaging, 26th Annual Symposium on Toxicologic Pathology and Novel Technologies, Puerto Rico. June 14, 2007.
  9. Ellisman, MH (2007) Integrating Neuroscience Knowledge: Brain Research in the Digital Age. Society for Neuroscience 2007 Conference, San Diego, CA. Nov. 3-7, 2007.
  10. Fong LL, Larson SD, Gupta A, Condit C, Bug WJ, Chen L, West R, Lamont S, Terada M, Martone ME (2007) An Ontology-Driven Knowledge Environment for Subcellular Neuroanatomy, OWL: Experiences and Directions, Innsbruck, Austria.
  11. Hayashi, T, ME Martone, A Thor, M Terada, MH Ellisman, M Hoshijima (2007)  Heart failure disrupts three-dimensional (3D) geometrics of functional membrane micro-domains in myocytes. American Heart Association's Scientific Sessions 2007 Circulation2007;116:II_10.
  12. Kennedy DN, R Buccigrossi, MH Ellisman, JS Grethe, C Haselgrove, ME Martone, N Preuss, M Sullivan, J Turner, K Wagner (2007)  The neuroimaging informatics tools and resources clearinghouse (NITRC). Society for Neuroscience 2007 Conference, San Diego, CA. Nov. 3-7, 2007.
  13. Larson SD, Fong LL, Chen L, Gupta A, Condit C, Martone ME, (2007) Reasoning Over Multi-Scale Neuroanatomical OWL Ontologies Aids Neural Model Construction. 11th International Conference on Cognitive and Neural Systems, Boston University.
  14. Larson SD, ME Martone, (2007) Analyzing multi-scale neuroanatomical data using automated reasoning. Society for Neuroscience 2007 Conference, San Diego, CA. Nov. 3-7, 2007.
  15. Larson SD, Martone ME (2007) Rule-Based Reasoning with a Multi-Scale Neuroanatomical Ontology, OWL: Experiences and Directions, Innsbruck, Austria.
  16. Liang CK, JP Schulze, R West, ME Martone, and MB Zwicker (2007) Bridging the Resolution Gap: Superimposition of Multiple Multi-Channel Volumes, Poster presented at the 34th Intl. Conf. & Exhibit. Comp. Graphics & Interact. Techniques (SIGGRAPH 2007), August 5-9 20007, San Diego. [abstract PDF]
  17. Martone ME, WW Wong, J Tran, J Sargis, L Fong, S Larson, M Terada, J Obyashi, A Gupta, MH Ellisman (2007) The Cell Centered Database: An on-line resource for managing, sharing and mining light and electron microscopic data.  Society for Neuroscience 2007 Conference, San Diego, CA. Nov. 3-7, 2007.
  18. Milazzo AC, L Jin, S Kleinfelder, S Li, P Leblanc, F Duttweiler, JC Bouwer, ST Peltier, MH Ellisman, N-H Xuong (2007)  Characterization of a new high-resolution, direct electron sensor for cryo-EM.  Workshop on Advanced Topics in EM Structure Determination at the National Resource for Automated Molecular Microscopy (NRAMM), Nov. 10-16, 2007.
  19. Miller M, A De Jaco, D Comoletti, MH Ellisman, P Taylor (2007)  Distinct neuroligin mutants implicated in autistic spectral disorders undergo similar defective endoplasmic reticulum trafficking. Society for Neuroscience 2007 Conference, San Diego, CA. 3-7, 2007.
  20. Perkins G, and MH Ellisman (2007) Unique structures of mitochondria for varied neuronal functions, International Society for Neurochemistry Meeting, Cancun, Mexico. August 19-24, 2007.
  21. Perkins GA, GE Sosinsky, S Ghassemzadeh, Y Jones, GM Gaietta, MH Ellisman (2007) Three-dimensional structural analysis of cytoskeletal cross-bridges in the paranodal region of the node of Ranvier in peripheral nerves. Society for Neuroscience 2007 Conference, San Diego, CA. 3-7, 2007.
  22. Phend KD, A Jacob, J Crum, ME Martone, MH Ellisman, RJ Weinberg, A Burette (2007) Ultrastructural organization of the presynaptic active zone. Society for Neuroscience 2007 Conference, San Diego, CA. Nov. 3-7, 2007.
  23. Price DL, VM Phung, A Paulino, MH Ellisman, E Masliah (2007) Increased mGluR5 receptor expression in Lewy Body disease. Society for Neuroscience 2007 Conference, San Diego, CA. 3 - 7, 2007.
  24. Smarr BL, WB Smith, TJ Deerinck, EA Bushong, MH Ellisman (2007) Astrocytes selectively distribute connexin subtypes throughout their domains. Society for Neuroscience 2007 Conference, San Diego, CA. 3-7, 2007.
  25. Smith WB, MH Ellisman (2007) A glutamate transporter model of aging. Society for Neuroscience 2007 Conference, San Diego, CA. Nov. 3 - 7, 2007.
  26. Spirou GA, GA Perkins, DR Kolson, JM Brown, RT Scott, MH Ellisman (2007) Specialized mitochondria in the calyx of Held anchor a cytoskeletal scaffold. Society for Neuroscience 2007 Conference, San Diego, CA. 3-7, 2007.
  27. Zagha EW, ME Martone, MH Ellisman, EJ Lang, B Rudy (2007) Spinocerebellar ataxia gene, Kv3.3, function in Purkinje cell somatic and dendritic membranes. Society for Neuroscience 2007 Conference, San Diego, CA. Nov. 3-7, 2007.

Tuesday, 13-Oct-2009 15:39:30 PDT